Irresistible Pumpkin Pie Thumbprint Cookies: Your Ultimate Fall & Holiday Dessert Guide
These Pumpkin Pie Filled Thumbprint Cookies are an absolute dream come true for anyone who adores the classic flavors of pumpkin pie but craves a more convenient, bite-sized treat. Imagine the creamy, richly spiced pumpkin filling, nestled in a sweet, buttery shortbread crust, and crowned with a dollop of fluffy whipped cream – all transformed into charming, individual easy pumpkin pie cookies! Forget the fuss of making a traditional pie crust from scratch; our shortbread cookie base comes together quickly, allowing you to whip up these delightful treats for all your Fall gatherings and holiday parties with ease.

This simple cookie recipe expertly blends the comforting essence of a traditional pumpkin pie into an accessible cookie format. It features a rich brown sugar shortbread base that melts in your mouth, perfectly complementing the smooth, aromatic filling made with real pumpkin puree and a medley of warm spices. A final flourish of whipped cream transforms each bite into a delightful individual mini pumpkin pie experience! As someone who finds these cookies even more enchanting than a classic pumpkin pie, I’m absolutely thrilled to share them at Thanksgiving this year, alongside my beloved Sweet Potato Cupcakes. Get ready to impress your guests and satisfy every autumn craving with these unbelievably delicious pumpkin pie thumbprint cookies.
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Why You’ll Love These Pumpkin Pie Thumbprint Cookies
These pumpkin pie thumbprint cookies are more than just a dessert; they’re a celebration of fall flavors and holiday cheer, designed for effortless baking and maximum enjoyment. Here’s why they’re destined to become a beloved staple in your recipe collection:
- Minimal Ingredients, Maximum Flavor: You’ll only need a handful of common pantry staples – just 9 ingredients in total – and absolutely no fancy equipment to create these delightful pumpkin pie shortbread cookies. This makes them incredibly approachable for bakers of all skill levels, ensuring a stress-free baking experience.
- All the Pie, None of the Fuss: Enjoy the rich, creamy, and warmly spiced goodness of a traditional pumpkin pie without the usual hassle. Forget rolling out a fragile pie crust or dealing with lengthy baking times. These cookies offer that iconic pumpkin pie taste in a fraction of the time, perfect for when you crave a quick yet impressive dessert.
- Perfectly Portioned & Presentation-Ready: Serving individual pumpkin pie cookies is not only fun but also incredibly practical. Each guest gets their own adorable mini pumpkin pie, making for elegant presentation and easy portion control. They’re a charming alternative to a whole pie, ideal for potlucks, parties, or simply a cozy evening treat.
- The Epitome of Fall Flavors: With their blend of warm spices and rich pumpkin puree, these cookies encapsulate the very essence of autumn. Every bite delivers a comforting burst of seasonal taste, making them an ideal dessert for crisp fall days, Halloween festivities, or the much-anticipated Thanksgiving feast.
- Versatile for Any Occasion: Whether you’re hosting a grand holiday dinner or simply looking for a sweet treat to enjoy with your afternoon coffee, these cookies fit the bill. They’re robust enough for travel, making them a fantastic option for sharing with friends and family.
Essential Ingredients for Perfect Pumpkin Pie Thumbprint Cookies
Crafting these delectable pumpkin pie thumbprint cookies starts with a selection of fresh, high-quality ingredients. Each component plays a crucial role in achieving that perfect balance of sweet, spiced, and buttery goodness. Here’s a closer look at what you’ll need:

- Pumpkin Puree: The heart of our classic pumpkin pie filling! For convenience and consistent results, canned pumpkin puree is perfectly acceptable and saves a lot of time and mess compared to making your own from scratch. The most crucial detail here is to ensure you purchase *pure pumpkin* and not pumpkin pie filling, which already contains added spices and sweeteners that would alter the flavor profile of our recipe.
- Sweetened Condensed Milk: This is one of my secret weapon ingredients, bringing an unparalleled level of sweetness, richness, and a beautifully creamy consistency to the pumpkin filling. It’s what gives our “mini pies” their luscious, smooth texture. There’s no good substitute for this in terms of both flavor and texture.
- Pumpkin Pie Spice: This fragrant blend is absolutely vital for that signature autumn taste. You can use either a high-quality store-bought pumpkin pie spice or create your own homemade blend. Keeping it in your pantry is a smart move, as it’s perfect for a variety of other fall bakes, like my Homemade Snickerdoodle Pumpkin Bread!
- Brown Sugar: Unlike granulated sugar, brown sugar lends a subtle molasses flavor to both the shortbread base and the pumpkin filling, which is characteristic of traditional pumpkin pie. You can use either light or dark brown sugar in this recipe; simply choose whatever you have on hand or prefer for a slightly deeper caramel note.
- Unsalted Butter (Room Temperature): The foundation of any great shortbread cookie! Using unsalted butter allows you to control the overall saltiness of the cookies. Ensuring it’s at room temperature is crucial for proper creaming with the sugar, creating a light and airy base.
- All-Purpose Flour: This provides the structure for our shortbread cookies. Proper measurement is key here – too much flour can lead to dry, crumbly cookies, while too little might make them spread too much. I always recommend weighing flour for accuracy.
- Vanilla Extract: A touch of vanilla enhances all the other flavors, adding a subtle warmth and sweetness to the shortbread.
- Salt: A small amount of salt balances the sweetness and brings out the depth of the other ingredients in both the cookie and the filling.
- Egg Yolk: Used in the pumpkin filling, the egg yolk acts as an emulsifier and thickener, contributing to the rich, smooth texture of the pumpkin custard.
- Whipped Cream (Optional, for Topping): While optional, a dollop of freshly whipped cream elevates these cookies to true pumpkin pie status, adding a light, airy contrast to the dense filling and buttery crust.
See the full recipe card below for a complete list of ingredients and precise measurements.
Exciting Substitutions & Variations
While these pumpkin pie thumbprint cookies are perfect as they are, don’t hesitate to get creative and customize them to your liking! Here are some delightful twists you can explore:
- Pecan Pie Delight: For a delightful nutty crunch, sprinkle finely chopped pecans on top of the pumpkin pie filled cookies just before baking. This adds a fantastic texture and a hint of a beloved holiday pie flavor.
- Chai Spice Adventure: If you’re a fan of complex, aromatic spices, substitute a fragrant chai spice mix in place of the pumpkin pie spice. This will infuse your cookies with notes of cardamom, ginger, cloves, and cinnamon for a unique and sophisticated twist.
- Decadent Cream Cheese Frosting: For an even richer and more indulgent version of these pumpkin pie filling cookies, swap out the whipped cream topping for a swirl of tangy, sweet cream cheese frosting. It adds another layer of creamy texture and flavor that’s simply irresistible.
- White Chocolate Drizzle: Once the cookies have cooled completely, melt some white chocolate and drizzle it decoratively over the top. The sweetness of the white chocolate pairs wonderfully with the spiced pumpkin.
- Nutmeg or Cinnamon Dusting: For a simple yet effective garnish, dust the finished, cooled cookies with a touch of ground cinnamon or freshly grated nutmeg just before serving. This enhances the spiced aroma and adds a professional touch.
This recipe has been carefully tested with the listed ingredients to ensure optimal results. If you decide to replace or add any ingredients, please share your creative outcomes in the comments below! We’d love to hear how your variations turned out!
How To Make Delicious Pumpkin Pie Thumbprint Cookies
Creating these delightful pumpkin pie thumbprint cookies is a straightforward process, broken down into simple, easy-to-follow steps. Let’s get baking!

Step 1: Prepare the Shortbread Base. In a large bowl, using a stand mixer fitted with the paddle attachment or a hand mixer, cream together the room temperature unsalted butter and brown sugar. Beat them on medium speed for 2-3 minutes until the mixture is light, fluffy, and noticeably paler in color. This creaming process incorporates air, which is essential for a tender shortbread. Then, add the vanilla extract and mix until it is thoroughly combined with no streaks remaining.

Step 2: Incorporate Dry Ingredients. Gradually add the all-purpose flour and salt to the wet ingredients. Mix on low speed until the flour is *just* combined. Be careful not to overmix, as this can develop the gluten in the flour, resulting in a tough, rather than tender, shortbread cookie. The dough should come together but still be soft.

Step 3: Form and Chill the Cookies. Using a cookie scoop (approximately 4 teaspoon capacity), scoop the shortbread cookie dough and roll each portion into a smooth ball. Place them on baking sheets lined with parchment paper, ensuring they are about 2 inches apart. Next, gently press your thumb (or the back of a rounded teaspoon) into the center of each dough ball to create a well for the filling. Be careful not to press all the way through the bottom. Once formed, chill the cookies in the refrigerator or freezer for at least 30 minutes. This crucial step helps prevent the cookies from spreading too much during baking and ensures a neat thumbprint cavity. Preheat your oven to 375°F (190°C) while the dough chills.

Step 4: Prepare the Pumpkin Pie Filling. While your cookie dough is chilling, it’s time to create the luscious pumpkin pie filling. In a medium bowl, whisk together the pumpkin puree, egg yolk, sweetened condensed milk, brown sugar, all-purpose flour, and pumpkin pie spice until the mixture is completely smooth and well combined. The flour in the filling helps to set the pumpkin custard during baking, ensuring a firm yet creamy texture.

Step 5: Fill and Bake. Retrieve your chilled, firm cookie dough balls from the refrigerator or freezer. Carefully spoon the prepared pumpkin pie filling into each thumbprint well, filling them as high as possible without overflowing the edges. The filling will set and slightly sink during baking, so don’t be shy! Bake the cookies in your preheated 375°F (190°C) oven for 10-13 minutes, or until the edges of the shortbread cookies are just beginning to turn a light golden brown and the pumpkin filling appears set and no longer jiggly in the center.

Step 6: Cool and Garnish. Once baked, transfer the cookies on their baking sheet to a wire rack and allow them to cool completely. This is crucial for the pumpkin filling to fully set and for the cookies to achieve their optimal texture. Before serving, generously top each pumpkin pie cookie with a dollop of whipped cream. This final touch adds a light, creamy finish that perfectly mimics a slice of classic pumpkin pie. Enjoy these delightful individual treats!
Expert Tips for Perfect Pumpkin Pie Thumbprint Cookies
Achieving bakery-quality pumpkin pie thumbprint cookies is easy with these insider tips and tricks:
- Precision with Flour Measurement: For the most accurate and consistent results, always use a kitchen scale to weigh your flour in grams (refer to the “metric” tab in the recipe card below). If you don’t have a scale, be sure to use the “spoon and level” method: gently spoon the all-purpose flour into your measuring cup until it’s overflowing, then level it off with a straight edge (like the back of a knife). *Never pack the flour* into the measuring cup, as this can add too much flour, leading to a dry cookie dough that cracks when you try to make the thumbprint indent.
- Chilling is Crucial: Ensure your cookie dough is well chilled before filling and baking. This isn’t just a suggestion; it’s a vital step. Chilling solidifies the butter in the dough, which helps the cookies maintain their shape and prevents them from spreading excessively in the oven. It also ensures that the pumpkin filling stays neatly contained within the well, rather than oozing over the edges.
- Don’t Be Shy with the Filling: When it comes to filling the shortbread cookies, don’t hold back! Spoon the pumpkin pie filling as high as it will go without spilling over the sides of the cookies. The filling will naturally settle and slightly shrink as it bakes, so a generously filled well will result in a beautifully plump and satisfying center. Rest assured, it shouldn’t bubble over in the oven if properly chilled.
- Save That Extra Pumpkin Puree: Don’t let any leftover pumpkin puree go to waste! Transfer it to an airtight container and freeze it for future use. When you’re ready to bake again, simply defrost it in the refrigerator. Alternatively, use it immediately to whip up other delicious fall treats like Chocolate Pumpkin Muffins, No Bake Mini Pumpkin Cheesecakes, or a comforting Pumpkin Spice Coffee Cake!
- Room Temperature Ingredients for Best Texture: Always use room temperature butter and egg yolk for both the shortbread dough and the pumpkin filling. Room temperature butter creams more smoothly with sugar, creating an evenly textured dough. Similarly, a room temperature egg yolk will emulsify better with the other filling ingredients, leading to a silky-smooth custard.
- Lining Baking Sheets: Line your baking sheets with parchment paper or silicone mats. This prevents the cookies from sticking, ensures even baking, and makes for super easy cleanup.
- Avoid Overbaking: Keep a close eye on your cookies as they bake. Shortbread is meant to be tender, not crispy or tough. Remove them from the oven as soon as the edges are lightly golden and the filling is set. They will continue to firm up slightly as they cool on the hot baking sheet.
Pumpkin Pie Thumbprint Cookies: Frequently Asked Questions
Got questions about making these delightful cookies? We’ve got answers to ensure your baking experience is a success!
This is a common and important distinction! Pumpkin puree consists of only one ingredient: pure, cooked, and pureed pumpkin. It contains no added spices, sugar, or other ingredients. Pumpkin pie filling, on the other hand, is a ready-to-use mixture that already contains added sugar, spices (like cinnamon, nutmeg, ginger, and cloves), and sometimes even milk or eggs. For this recipe, it’s crucial to use pure pumpkin puree to control the flavor profile and sweetness exactly as intended.
No, evaporated milk cannot be substituted for sweetened condensed milk in this recipe. While both are canned milk products, they are vastly different. Evaporated milk is unsweetened and has a thinner consistency, whereas sweetened condensed milk is thick, very sweet, and plays a critical role in providing both the sweetness and creamy texture to our pumpkin filling. Using evaporated milk would drastically alter the taste and consistency of your cookies.
Puffy shortbread cookies are often a sign of too much flour. Over-measuring flour can make the dough too stiff, which then expands more during baking than intended for a classic shortbread texture. To avoid this, I highly recommend using a food scale to weigh your flour in grams (you can find the metric measurements in the recipe card below). If you’re relying on measuring cups, remember the “spoon and level” method: gently spoon the flour into the cup and level it off with a straight edge – absolutely do not pack it down!
Cracking dough is another common issue that often points back to too much flour, or possibly not enough moisture/fat. When the dough is too dry, it loses its elasticity and can’t hold its shape when an indent is made. Again, accurate flour measurement (preferably by weight) is your best defense. If this does happen and your dough feels excessively dry, you can try incorporating an extra tablespoon or two of softened butter. While this might slightly alter the final texture, it could potentially save the cookies in a pinch and prevent further cracking.
Absolutely! These cookies are great for making ahead. You can prepare the cookie dough and chill it for up to 2-3 days before baking, or even freeze the formed (but unfilled) cookie dough balls for up to a month. Once baked, the unfilled cookies can be stored at room temperature or in the refrigerator. If you plan to add whipped cream, it’s best to do so just before serving for optimal freshness and appearance.
For best results, it’s always recommended to add the whipped cream just before serving. If you have leftovers that are already topped with whipped cream, they must be stored in an airtight container in the refrigerator and consumed within 1-2 days. The whipped cream will start to lose its firmness and can make the cookies soggy over time. Un-topped cookies, however, store much better.

Storage & Freezing Instructions
Proper storage ensures your pumpkin pie thumbprint cookies stay fresh and delicious for as long as possible. Here’s how to keep them at their best:
Refrigerator Storage
Store baked and cooled pumpkin pie cookies in an airtight container in the refrigerator for up to 3 days. It’s best to add the whipped cream topping right before serving, as moisture from the cream can soften the cookies over time. If you do have leftover cookies already topped with whipped cream, consume them within 1-2 days and keep them refrigerated.
Freezing Instructions
These cookies freeze beautifully! To freeze, place the baked and completely cooled cookies (without whipped cream) in a single layer on a baking sheet and freeze until solid. Once solid, transfer them to an airtight freezer-safe container or a heavy-duty freezer bag, layering them with parchment paper to prevent sticking. They can be frozen for up to 1 month. When you’re ready to enjoy them, simply place the frozen cookies on the counter for about an hour to thaw at room temperature, then top with fresh whipped cream and serve.
More Irresistible Fall Cookie Recipes You’ll Love
If you’re as enamored with fall baking as we are, you’ll definitely want to explore these other fantastic cookie recipes that capture the essence of the season. Perfect for any autumn occasion, these treats are sure to delight!
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Maple Pecan Cookies
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Oatmeal Pumpkin Cheesecake Cookies
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Chai Sugar Cookies
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Salted Espresso Chocolate Chip Cookies
-
Salted Espresso Chocolate Chip Cookies

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Thank you!
-Kayla
📖 Recipe

Pumpkin Pie Filled Thumbprint Cookies
Kayla Burton
16 votes
Pin Recipe
20
minutes
10
minutes
30
minutes
1
hour
Dessert
American
21
cookies
174
kcal
Equipment
-
Baking sheet -
Mixing bowls -
Measuring spoons -
Scale/measuring cups -
Electric mixer
recommended -
Whisk -
Cookie scoop
4 teaspoon capacity -
Cooling rack
Kayla’s Top Tip
Weigh dry ingredients in grams (g) with a food scale for best results!
Toggle on to prevent your screen from going dark
Ingredients
Shortbread Cookie Dough
-
1
cup
(
227
g)
unsalted butter
room temperature -
½
cup
(
100
g)
brown sugar
light or dark, packed -
1
teaspoon
vanilla extract -
2⅓
cups
(
291.67
g)
all-purpose flour
weighed in grams or spooned and leveled -
¼
teaspoon
salt
Pumpkin Pie Filling
-
½
cup
(
122.5
g)
pumpkin puree -
⅓
cup
(
102
g)
sweetened condensed milk -
1
large
egg yolk -
2
tablespoons
(
25
g)
brown sugar
light or dark, packed -
2
teaspoons
(
5
g)
all-purpose flour -
½
teaspoon
pumpkin pie spice -
whipped cream
optional, for topping
Instructions
Shortbread Cookie Dough
-
In a large bowl, cream together the room temperature unsalted butter and brown sugar until light and fluffy. This typically takes 2-3 minutes with a hand mixer on medium speed. Once fluffy, mix in the vanilla extract until thoroughly combined.
-
Gradually mix in the all-purpose flour and salt until the ingredients are just combined and a soft cookie dough forms. Be careful not to overmix, as this can make the shortbread tough.
-
Using a cookie scoop (about 4 teaspoon capacity), portion and roll the dough into smooth balls. Place them on a prepared baking sheet, leaving about 2 inches between each cookie. Gently press your thumb into the center of each dough ball to create a well. Exercise caution to avoid pressing through the bottom, as this could cause filling to leak during baking.
-
Chill the formed thumbprint cookies in the refrigerator or freezer for at least 30 minutes. This step is essential to help the cookies hold their shape and prevent excessive spreading. While the cookies chill, preheat your oven to 375°F (190°C) and proceed to make the pumpkin pie filling.
Pumpkin Pie Filling
-
In a medium bowl, thoroughly whisk together the pumpkin puree, sweetened condensed milk, egg yolk, brown sugar, all-purpose flour, and pumpkin pie spice until the mixture is smooth and uniform.
Assemble and Bake
-
Carefully spoon the prepared pumpkin pie filling into each chilled cookie well, filling them generously to the brim without overflowing. Bake at 375°F (190°C) for approximately 10-13 minutes, or until the edges of the shortbread cookies are lightly golden and the pumpkin filling is set and no longer appears wet or jiggly in the center.
-
Allow the cookies to cool on the baking pan for several minutes until they are firm enough to handle without breaking. Then, carefully transfer them to a wire rack to cool completely. The filling will continue to set as they cool. Before serving, garnish each pumpkin pie cookie with a dollop of whipped cream (optional, but highly recommended!).
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Notes
Butter: 1 cup of butter typically equals 2 sticks of butter (8 ounces or 227 grams). Always check your butter’s packaging to confirm for precise measurements. Using unsalted butter is recommended for better control over the recipe’s salt content.
Flour: For the most accurate and best results in shortbread cookies, it is highly recommended to weigh your all-purpose flour in grams (refer to the “metric” tab in the recipe card above for precise weight). If you are using measuring cups, please use the “spoon and level” method: gently spoon the flour into the measuring cup and then level it off with a straight edge without packing it down. Over-packed flour can lead to dry, dense, or cracking cookie dough.
Storage: Store baked and completely cooled cookies (preferably without the whipped cream topping) in an airtight container in the refrigerator for up to 3 days. For longer storage, freeze the unfrosted cookies in an airtight container for up to 1 month. Thaw at room temperature before adding whipped cream and serving.
Nutrition: The provided nutrition information in the recipe card is an estimate per serving. Please note that the calorie accuracy and other nutritional values are not guaranteed and can vary based on specific ingredients and brands used.
Pumpkin Pie Filling Yield: This recipe often yields a little extra pumpkin pie filling. This is a deliberate measure to ensure there’s more than enough to generously fill all the thumbprint cookies, especially since the exact size and depth of the thumbprints can vary slightly. Don’t worry if you have a tablespoon or two left over!
Calories:
174
kcal
Carbohydrates:
20
g
Protein:
2
g
Fat:
10
g
Saturated Fat:
6
g
Polyunsaturated Fat:
0.4
g
Monounsaturated Fat:
2
g
Trans Fat:
0.4
g
Cholesterol:
34
mg
Sodium:
38
mg
Potassium:
58
mg
Fiber:
1
g
Sugar:
9
g
Vitamin A:
1203
IU
Vitamin C:
0.4
mg
Calcium:
27
mg
Iron:
1
mg
The provided nutritional information is an estimate per serving. Accuracy is not guaranteed.
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